Publications
Selected Papers
Liat Shenhav and David Zeevi. Resource conservation manifests in the genetic code. Science 370(6517), 2020. [link]
David Zeevi*, Tal Korem*, Anastasia Godneva, Noam Bar, Alexander Kurilshikov, Maya Lotan-Pompan, Adina Weinberger, Jingyuan Fu, Cisca Wijmenga, Alexandra Zhernakova, Eran Segal. Structural variation in the gut microbiome associates with host health. Nature 568(7750), 2019. [link]
David Zeevi*, Tal Korem*, Niv Zmora*, David Israeli*, Daphna Rothschild, Adina Weinberger, Orly Ben-Yacov, Dar Lador, Tali Avnit-Sagi, Maya Lotan-Pompan, Jotham Suez, Jamal A. Mahdi, Elad Matot, Gal Malka, Noa Kosower, Michal Rein, Gili Zilberman-Schapira, Lenka Dohnalová, Meirav Pevsner-Fischer, Rony Bikovsky, Zamir Halpern, Eran Elinav, Eran Segal. Personalized nutrition by prediction of glycemic responses. Cell 163(5), 2015. [link]
Tal Korem*, David Zeevi*, Jotham Suez*, Adina Weinberger*, Tali Avnit-Sagi, Maya Pompan-Lotan, Elad Matot, Gil Jona, Alon Harmelin, Nadav Cohen, Alexandra Sirota-Madi, Christoph A Thaiss, Meirav Pevsner-Fischer, Rotem Sorek, Ramnik J Xavier, Eran Elinav, Eran Segal. Growth dynamics of gut microbiota in health and disease inferred from single metagenomic samples. Science 349(6252), 2015. [link]
Additional Papers
2022
Naama Aviram, Ashley N Thornal, David Zeevi, Luciano A Marraffini. Different modes of spacer acquisition by the Staphylococcus epidermidis type III-A CRISPR-Cas system. Nucleic Acids Research online. [link]
2021
Doron Levin, Neta Raab, Yishay Pinto, Daphna Rothschild, Gal Zanir, Anastasia Godneva, Nadav Mellul, David Futorian, Doran Gal, Sigal Leviatan, David Zeevi, Ido Bachelet, Eran Segal. Diversity and functional landscapes in the microbiota of animals in the wild. Science 372(6539). [link]
2020
Noam Bar*, Tal Korem*, Omer Weissbrod, David Zeevi, Daphna Rothschild, Sigal Leviatan, Noa Kosower, Maya Lotan-Pompan, Adina Weinberger, Caroline I Le Roy, Cristina Menni, Alessia Visconti, Mario Falchi, Tim D Spector, Jerzy Adamski, Paul W Franks, Oluf Pedersen, Eran Segal. A reference map of potential determinants for the human serum metabolome. Nature 588(7836), 2020. [link]
2018
Jotham Suez*, Niv Zmora*, Gili Zilberman-Schapira*, Uria Mor*, Mally Dori-Bachash, Stavros Bashiardes, Maya Zur, Dana Regev-Lehavi, Rotem Ben-Zeev Brik, Sara Federici, Max Horn, Yotam Cohen, Andreas E Moor, David Zeevi, Tal Korem, Eran Kotler, Alon Harmelin, Shalev Itzkovitz, Nitsan Maharshak, Oren Shibolet, Meirav Pevsner-Fischer, Hagit Shapiro, Itai Sharon, Zamir Halpern, Eran Segal, Eran Elinav. Post-antibiotic gut mucosal microbiome reconstitution is impaired by probiotics and improved by autologous FMT. Cell 174(6), 1406-1423. [link]
Daphna Rothschild*, Omer Weissbrod*, Elad Barkan*, Alexander Kurilshikov, Tal Korem, David Zeevi, Paul Igor Costea, Anastasia Godneva, Iris N Kalka, Noam Bar, Smadar Shilo, Dar Lador, Arnau Vich Vila, Niv Zmora, Meirav Pevsner-Fischer, David Israeli, Noa Kosower, Gal Malka, Bat Chen Wolf, Tali Avnit-Sagi, Maya Lotan-Pompan, Adina Weinberger, Zamir Halpern, Shai Carmi, Jingyuan Fu, Cisca Wijmenga, Alexandra Zhernakova, Eran Elinav, Eran Segal. Environment dominates over host genetics in shaping human gut microbiota. Nature 555(7695). [link]
2017
Tal Korem*, David Zeevi*, Niv Zmora, Omer Weissbrod, Noam Bar, Maya Lotan-Pompan, Tali Avnit-Sagi, Noa Kosower, Gal Malka, Michal Rein, Jotham Suez, Ben Z Goldberg, Adina Weinberger, Avraham A Levy, Eran Elinav, Eran Segal. Bread Affects Clinical Parameters and Induces Gut Microbiome-Associated Personal Glycemic Responses. Cell Metabolism 25(6) [link]
2016
Christoph A Thaiss*, Maayan Levy*, Tal Korem*, Lenka Dohnalová, Hagit Shaprio, Diego A Jaitin, Eyal David, Deborah R Winter, Meital Gury-BenAri, Evgeny Tatirovsky, Timur Tuganbaev, Sara Federici, Niv Zmora, David Zeevi, Mally Dori-Bachash, Meirav Pevsner-Fischer, Elena Kartvelishvily, Alexander Brandis, Alon Harmelin, Oren Shibolet, Zamir Halpern, Kenya Honda, Ido Amit, Eran Segal, and Eran Elinav. Microbiota diurnal rhythmicity programs host transcriptome oscillations. Cell 167(6). [link]
David Zeevi*, Tal Korem* and Eran Segal, Talking about cross-talk: the immune system and the microbiome, Genome Biology 17(50). [link]
Niv Zmora*, David Zeevi*, Tal Korem*, Eran Segal, Eran Elinav. Taking it personally: personalized utilization of the human microbiome in health and disease. Cell Host & Microbe 19(1), 2016. [link]
2015
Maayan Levy*, Christoph A Thaiss*, David Zeevi, Lenka Dohnalová, Gili Zilberman-Schapira, Jamal A. Mahdi, Eyal David, Alon Savidor, Tal Korem, Yonatan Herzig, Meirav Pevsner-Fischer, Hagit Shapiro, Anette Christ, Alon Harmelin, Zamir Halpern, Eicke Latz, Richard A Flavell, Ido Amit, Eran Segal, Eran Elinav. Microbiota-modulated metabolites shape the intestinal microenvironment by regulating NLRP6 inflammasome signaling. Cell 163(6). [link]
Christoph A. Thaiss*, David Zeevi*, Maayan Levy*, Eran Segal, Eran Elinav. A day in the life of the meta-organism: diurnal rhythms of the intestinal microbiome and its host. Gut Microbes 6(2). [link]
2014
Christoph A Thaiss, David Zeevi, Maayan Levy, Gili Zilberman-Schapira, Jotham Suez, Anouk C Tengeler, Lior Abramson, Meirav N Katz, Tal Korem, Niv Zmora, Yael Kuperman, Inbal Biton, Shlomit Gilad, Alon Harmelin, Hagit Shapiro, Zamir Halpern, Eran Segal, Eran Elinav. Transkingdom control of microbiota diurnal oscillations promotes metabolic homeostasis. Cell 159 (3), 514-529. [link]
Jotham Suez, Tal Korem*, David Zeevi*, Gili Zilberman-Schapira*, Christoph A. Thaiss, Ori Maza, David Israeli, Niv Zmora, Shlomit Gilad, Adina Weinberger, Yael Kuperman, Alon Harmelin, Ilana Kolodkin-Gal, Hagit Shapiro, Zamir Halpern, Eran Segal, Eran Elinav. Artificial sweeteners induce glucose intolerance by altering the gut microbiota. Nature 514 (7521). [link]
2013 and earlier
Ron Bochner, Yael Ziv, David Zeevi, Maya Donyo, Lital Abraham, Ruth Ashery-Padan, Gil Ast. Phosphatidylserine increases IKBKAP levels in a humanized knock-in IKBKAP mouse model. Hum Mol Genet 22(14). [link]
Nimrod D Rubinstein*, David Zeevi*, Yaara Oren, Gil Segal, Tal Pupko. The operonic location of auto-transcriptional repressors is highly conserved in bacteria. Mol Biol Evol 28(12). [link]
Hadas Keren, Maya Donyo, David Zeevi, Channa Maayan, Tal Pupko, Gil Ast. Phosphatidylserine increases IKBKAP levels in familial dysautonomia cells. PLoS ONE 5(12). [link]